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* Equal contribution ^ Co-corresponding author
Published in J. Am. Med. Inform. Assoc., 2020
Recommended citation: *Bergquist T, *Yan Y, Schaffter T, Yu T, Pejaver V, Hammarlund N, Prosser J, Guinney J, Mooney SD (2020) Piloting a model-to-data approach to enable predictive analytics in healthcare through patient mortality prediction. J. Am. Med. Inform. Assoc. 27(9) 1393-1400.
Published in J. Clin. Virol., 2020
Recommended citation: Joshi R, Pejaver V, Hammarlund N, Sung H, Lee SK, Lee H, Scott G, Gombar S, Shah N, Shen S, Mooney SD, Pinsky B (2020) A predictive tool for identification of SARS-CoV-2 PCR-negative emergency department patients using routine test results. J. Clin. Virol. 129 104502.
Published in eLife, 2020
Recommended citation: Fernandes JD, Sarabipour S, Smith CT, Niemi NM, Jadavji NM, Kozik AJ, Holehouse AS, Pejaver V, Symmons O, Filho AW, Haage A (2020) A survey-based analysis of the academic job market. eLife 9(e54097) .
Published in BMC Public Health, 2020
Recommended citation: Bergquist T, Pejaver V, Hammarlund N, Mooney SD, Mooney SJ (2020) Evaluation of the secondary use of electronic health records to detect seasonal, holiday-related, and rare events related to traumatic injury and poisoning. BMC Public Health 20(1) 46.
Published in Hum. Mutat., 2019
Recommended citation: Voskanian A, Katsonis P, Lichtarge O, Pejaver V, Radivojac P, Mooney SD, ..., Neuhausen S, Ziv E, Pal LR, Andreoletti G, Brenner S, Kann MG (2019) Assessing the performance of in-silico methods for predicting the pathogenicity of variants in the gene CHEK2, among Hispanic females with breast cancer. Hum. Mutat. 40(9) 1612-1622.
Published in Hum. Mutat., 2019
Recommended citation: ^Pejaver V, Babbi G, Casadio R, Folkman L, Katsonis P, Kundu K, Lichtarge O, Martelli PL, Miller M, Moult J, Pal LR, Savojardo C, Yin Y, Zhou Y, Radivojac P, Bromberg Y (2019) Assessment of methods for predicting the effects of PTEN and TPMT protein variants. Hum. Mutat. 40(9) 1495-1506.
Published in Hum. Mutat., 2019
Recommended citation: Cline M, Babbi G, Bonache S, Cao Y, Casadio R, Cruz X, ..., Pejaver V, ..., Sun Y, Topper S, Parsons MT, Spurdle AB, Goldgar DE, ENIGMA Consortium (2019) Assessment of blind predictions of the clinical significance of BRCA1 and BRCA2 variants. Hum. Mutat. 40(9) 1546-1556.
Published in Hum. Mutat., 2019
Recommended citation: Clark WT, Kasak L, Bakolitsa C, Hu Z, Andreoletti G, Babbi G, ..., Pejaver V, Wang M, Wei L, Moult J, Yu GK, Brenner SE, LeBowitz JH (2019) Assessment of predicted enzymatic activity of alpha-N-acetylglucosaminidase (NAGLU) variants of unknown significance for CAGI 2016. Hum. Mutat. 40(9) 1519-1529.
Published in Sci. Adv., 2019
Recommended citation: Rogers J, Raveendran M, Harris RA, Mailund T, Leppälä, Athanasiadis G, ..., Zinner D, Roos C, Jolly CJ, Gibbs RA, Worley KC, Consortium BG (2019) The comparative genomics and complex population history of Papio baboons. Sci. Adv. 5(1) eaau6947.
Published in PLoS One, 2018
Recommended citation: *Ismail WA, *Pagel KA, Pejaver V, Zhang SV, Casasa S, Mort M, Cooper DN, Hahn MW, Radivojac P (2018) The sequencing and interpretation of the genome obtained from a Serbian individual. PLoS One 13(12) e0208901.
Published in Sci. Rep., 2018
Recommended citation: *Wang J, *Pejaver VR, Dann GP, Wolf MY, Kellis M, Huang Y, Garcia BA, Radivojac P, Kashina A (2018) Target site specificity and in vivo complexity of the mammalian arginylome. Sci. Rep. 8(1) 16177.
Published in Annu. Rev. Public Health, 2018
Recommended citation: Mooney SJ, Pejaver V (2018) Big data in public health: terminology, machine learning, and privacy. Annu. Rev. Public Health 39 95-112.
Published in Genome Med., 2017
Recommended citation: Glusman G, Rose PW, Prlic A, Dougherty J, Duarte JM, Hoffman AS, ..., Pejaver V, ..., Reynolds S, Rokem A, Schwede T, Song S, Tilgner H, Valasatava Y, Zhang Y, Deutsch EW (2017) Mapping genetic variations to three-dimensional protein structures to enhance variant interpretation: a proposed framework. Genome Med. 9(113) .
Published in Hum. Mutat., 2017
Recommended citation: Pejaver V, Mooney SD, Radivojac P (2017) Missense variant pathogenicity predictors generalize well across a range of function-specific prediction challenges. Hum. Mutat. 38(9) 1092-1108.
Published in Hum. Mutat., 2017
Recommended citation: Daneshjou R, Wang Y, Bromberg Y, Bovo S, Martelli PL, Babbi G, ..., Pejaver V, ..., Altman R, Klein TE, Hoskins RA, Repo S, Brenner SE, Morgan AA (2017) Working toward precision medicine: predicting phenotypes from exomes in the Critical Assessment of Genome Interpretation (CAGI) challenges. Hum. Mutat. 38(9) 1182-1192.
Published in J. Biomol. Struct. Dyn., 2017
Recommended citation: Reddy KD, Malipeddi J, DeForte S, Pejaver V, Radivojac P, Uversky VN, Deschenes RJ (2017) Physicochemical sequence characteristics that influence S-palmitoylation propensity. J. Biomol. Struct. Dyn. 35(11) 2337-2350.
Published in Bioinformatics, 2017
Recommended citation: Pagel KA, Pejaver V, Lin GN, Nam H, Mort M, Cooper DN, Sebat J, Iakoucheva LM, Mooney SD, Radivojac P (2017) When loss-of-function is loss of function: assessing mutational signatures and impact of loss-of-function genetic variants. Bioinformatics 33(14) i389-i398.
Published in bioRxiv, 2017
Recommended citation: Pejaver V, Urresti J, Lugo-Martinez J, Pagel KA, Lin GN, Nam H, Mort M, Cooper DN, Sebat J, Iakoucheva LM, Mooney SD, Radivojac P (2017) MutPred2: inferring the molecular and phenotypic impact of amino acid variants. bioRxiv 134981 .
Published in Am. J. Hum. Genet., 2016
Recommended citation: *Ioannidis NM, *Rothstein JH, Pejaver V, Middha S, McDonnell SK, Baheti S, ..., Ostrander E, Bailey-Wilson JE, Radivojac P, Thibodeau SN, Whittemore AS, Sieh W (2016) REVEL: an ensemble score for predicting the pathogenicity of rare non synonymous variants. Am. J. Hum. Genet. 99(4) 877-885.
Published in PLoS Comput. Biol., 2016
Recommended citation: Lugo-Martinez J, Pejaver V, Pagel KA, Jain S, Mort M, Cooper DN, Mooney SD, Radivojac P (2016) The loss and gain of functional amino acid residues is a frequent mechanism causing human inherited disease. PLoS Comput. Biol. 12(8) e10005091.
Published in Genome Announc., 2015
Recommended citation: Suzuki H, Dapper AL, Jackson CE, Lee H, Pejaver V, Doak TG, Lynch M, Preer JR (2015) Draft genome sequence of Caedibacter varicaedens, a Kappa killer endosymbiont bacterium of the ciliate Paramecium biaurelia. Genome Announc. 3(6) e01310-15.
Published in ACS Chem. Biol., 2015
Recommended citation: Khanal N, Pejaver V, Li Z, Radivojac P, Clemmer DE, Mukhopadhyay S (2015) Position of proline mediates the reactivity of S-palmitoylation. ACS Chem. Biol. 10(11) 2529-2536.
Published in Int. J. Mass Spectrom., 2014
Recommended citation: Li Z, Dilger JM, Pejaver V, Smiley D, Arnold RJ, Mooney SD, Mukhopadhyay S, Radivojac P, Clemmer DE (2014) Intrinsic size parameters for palmitoylated and carboxyamidomethylated peptides. Int. J. Mass Spectrom. 368 6-14.
Published in Protein Sci., 2014
Recommended citation: Pejaver V, Hsu W, Xin F, Dunker AK, Uversky VN, Radivojac P (2014) The structural and functional signatures of proteins that undergo multiple events of post-translational modification. Protein Sci. 23(8) 1077-1093.
Published in Bioinformatics, 2012
Recommended citation: Pejaver VR, An J, Rhee S, Bhan A, Choi J, Liu B, Lee H, Brown PJ, Kysela D, Brun YV, Kim S (2012) GeneclusterViz: a tool for conserved gene cluster visualization, exploration and analysis. Bioinformatics 28(11) 1527-1529.
Published in BMC Genomics, 2011
Recommended citation: Pejaver VR, Kim S (2011) Gene Cluster Profile Vectors: a method to infer functionally related gene sets by grouping proximity-based gene clusters. BMC Genomics 12(Suppl 2 - IEEE International Conference on Bioinformatics and Biomedicine 2010) S2.
Published in Protein function prediction for omics era, 2011
Recommended citation: Pejaver VR, Lee H, Kim S (2011) Gene cluster prediction and its application to genome annotation. Protein function prediction for omics era 35-54.
Published in Science, 2010
Recommended citation: Werren JH, Richards S, Desjardins CA, Niehuis O, Gadau J, Colbourne JK, ..., Pejaver V, ..., Wyder S, Yamada T, Yi SV, Zecher CN, Zhang L, Gibbs RA (2010) Functional and evolutionary insights from the genomes of three parasitoid Nasonia species. Science 327(5963) 343-348.